Detailed information of SNP:
|
SNP ID:
sf0603160821(Gbrowse)
Chromosome: chr06 Position: 3160821 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1319 | 96.89% | 3.11% |
| All Indica | 787 | 100.00% | 0.00% |
| All Japonica | 410 | 90.49% | 9.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 204 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 274 | 86.86% | 13.14% |
| Tropical Japonica | 80 | 100.00% | 0.00% |
| Japonica Intermediate | 56 | 94.64% | 5.36% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0603160821 | G->A | LOC_Os06g06740(LOC_Os06g06740.1) | Non-Synonymous SNP |