Detailed information of SNP:
|
SNP ID:
sf0603197142(Gbrowse)
Chromosome: chr06 Position: 3197142 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 56.51% | 43.49% |
| All Indica | 795 | 34.72% | 65.28% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 371 | 19.68% | 80.32% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 211 | 31.75% | 68.25% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0603197142 | A->T | LOC_Os06g06780(LOC_Os06g06780.1) | INTRON |