Detailed information of SNP:
|
SNP ID:
sf0603242536(Gbrowse)
Chromosome: chr06 Position: 3242536 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 85.11% | 14.89% |
| All Indica | 798 | 80.83% | 19.17% |
| All Japonica | 496 | 96.57% | 3.43% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 79.20% | 20.80% |
| Indica II | 212 | 83.02% | 16.98% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 334 | 95.21% | 4.79% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0603242536 | G->T | LOC_Os06g06860(LOC_Os06g06860.1) | Non-Synonymous SNP |