Detailed information of SNP:
|
SNP ID:
sf0603270544(Gbrowse)
Chromosome: chr06 Position: 3270544 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 89.69% | 10.31% |
| All Indica | 798 | 88.35% | 11.65% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 70.00% | 30.00% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0603270544 | G->A | INTERGENIC | None |