Detailed information of SNP:
|
SNP ID:
sf0603302649(Gbrowse)
Chromosome: chr06 Position: 3302649 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1370 | 82.12% | 17.88% |
| All Indica | 763 | 68.55% | 31.45% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 56 | 92.86% | 7.14% |
| Indica I | 360 | 64.72% | 35.28% |
| Indica II | 212 | 89.62% | 10.38% |
| Indica Intermediate | 191 | 52.36% | 47.64% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0603302649 | T->A | INTERGENIC | None |