Detailed information of SNP:
|
SNP ID:
sf0603302700(Gbrowse)
Chromosome: chr06 Position: 3302700 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1296 | 63.12% | 36.88% |
| All Indica | 721 | 61.72% | 38.28% |
| All Japonica | 456 | 58.77% | 41.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 50.41% | 49.59% |
| Indica II | 163 | 68.71% | 31.29% |
| Indica Intermediate | 193 | 77.20% | 22.80% |
| Temperate Japonica | 310 | 70.65% | 29.35% |
| Tropical Japonica | 92 | 18.48% | 81.52% |
| Japonica Intermediate | 54 | 59.26% | 40.74% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0603302700 | C->T | INTERGENIC | None |