Detailed information of SNP:
|
SNP ID:
sf0603317282(Gbrowse)
Chromosome: chr06 Position: 3317282 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 78.81% | 21.19% |
| All Indica | 793 | 67.97% | 32.03% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 370 | 65.14% | 34.86% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 210 | 50.95% | 49.05% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0603317282 | C->T | INTERGENIC | None |