Detailed information of SNP:
|
SNP ID:
sf0603464712(Gbrowse)
Chromosome: chr06 Position: 3464712 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 62.29% | 37.71% |
| All Indica | 797 | 73.65% | 26.35% |
| All Japonica | 496 | 54.84% | 45.16% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 78.61% | 21.39% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 210 | 54.29% | 45.71% |
| Temperate Japonica | 335 | 38.21% | 61.79% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0603464712 | T->C | INTERGENIC | None |