Detailed information of SNP:
|
SNP ID:
sf0603482014(Gbrowse)
Chromosome: chr06 Position: 3482014 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 96.10% | 3.90% |
| All Indica | 797 | 99.00% | 1.00% |
| All Japonica | 492 | 90.65% | 9.35% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 91 | 65.93% | 34.07% |
| Japonica Intermediate | 66 | 90.91% | 9.09% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0603482014 | A->G | INTERGENIC | None |