Detailed information of SNP:
|
SNP ID:
sf0603554761(Gbrowse)
Chromosome: chr06 Position: 3554761 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 51.17% | 48.83% |
| All Indica | 795 | 68.05% | 31.95% |
| All Japonica | 494 | 33.00% | 67.00% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 79.68% | 20.32% |
| Indica II | 213 | 59.62% | 40.38% |
| Indica Intermediate | 208 | 55.77% | 44.23% |
| Temperate Japonica | 333 | 24.02% | 75.98% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0603554761 | T->C | INTERGENIC | None |