Detailed information of SNP:
|
SNP ID:
sf0603679087(Gbrowse)
Chromosome: chr06 Position: 3679087 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1276 | 96.71% | 3.29% |
| All Indica | 730 | 94.38% | 5.62% |
| All Japonica | 430 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 336 | 87.80% | 12.20% |
| Indica II | 196 | 100.00% | 0.00% |
| Indica Intermediate | 198 | 100.00% | 0.00% |
| Temperate Japonica | 289 | 100.00% | 0.00% |
| Tropical Japonica | 80 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0603679087 | A->T | INTERGENIC | None |