Detailed information of SNP:
|
SNP ID:
sf0603710281(Gbrowse)
Chromosome: chr06 Position: 3710281 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 84.64% | 15.36% |
| All Indica | 799 | 79.22% | 20.78% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 80.80% | 19.20% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 59.72% | 40.28% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0603710281 | G->C | LOC_Os06g07660(LOC_Os06g07660.1) | INTRON |