Detailed information of SNP:
|
SNP ID:
sf0603906012(Gbrowse)
Chromosome: chr06 Position: 3906012 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 94.29% | 5.71% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 497 | 86.12% | 13.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 84.48% | 15.52% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0603906012 | A->T | LOC_Os06g08070(LOC_Os06g08070.1) | Non-Synonymous SNP |