Detailed information of SNP:
|
SNP ID:
sf0603907293(Gbrowse)
Chromosome: chr06 Position: 3907293 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 62.09% | 37.91% |
| All Indica | 783 | 35.38% | 64.62% |
| All Japonica | 485 | 98.14% | 1.86% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 371 | 25.61% | 74.39% |
| Indica II | 209 | 49.28% | 50.72% |
| Indica Intermediate | 203 | 38.92% | 61.08% |
| Temperate Japonica | 329 | 98.48% | 1.52% |
| Tropical Japonica | 90 | 97.78% | 2.22% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0603907293 | C->A | LOC_Os06g08070(LOC_Os06g08070.1) | INTRON |