Detailed information of SNP:
|
SNP ID:
sf0603937077(Gbrowse)
Chromosome: chr06 Position: 3937077 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 92.50% | 7.50% |
| All Indica | 796 | 94.35% | 5.65% |
| All Japonica | 484 | 88.02% | 11.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 212 | 80.66% | 19.34% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 322 | 87.58% | 12.42% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0603937077 | G->A | INTERGENIC | None |