Detailed information of SNP:
|
SNP ID:
sf0603939270(Gbrowse)
Chromosome: chr06 Position: 3939270 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 87.37% | 12.63% |
| All Indica | 797 | 87.45% | 12.55% |
| All Japonica | 489 | 98.36% | 1.64% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 373 | 83.65% | 16.35% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 91.80% | 8.20% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0603939270 | T->A | INTERGENIC | None |