Detailed information of SNP:
|
SNP ID:
sf0603981829(Gbrowse)
Chromosome: chr06 Position: 3981829 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1359 | 98.82% | 1.18% |
| All Indica | 778 | 100.00% | 0.00% |
| All Japonica | 458 | 96.72% | 3.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 100.00% | 0.00% |
| Indica II | 204 | 100.00% | 0.00% |
| Indica Intermediate | 205 | 100.00% | 0.00% |
| Temperate Japonica | 312 | 95.19% | 4.81% |
| Tropical Japonica | 85 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0603981829 | C->T | INTERGENIC | None |