Detailed information of SNP:
|
SNP ID:
sf0603995693(Gbrowse)
Chromosome: chr06 Position: 3995693 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1275 | 90.20% | 9.80% |
| All Indica | 661 | 81.39% | 18.61% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 297 | 90.57% | 9.43% |
| Indica II | 184 | 70.65% | 29.35% |
| Indica Intermediate | 180 | 77.22% | 22.78% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0603995693 | C->T | INTERGENIC | None |