Detailed information of SNP:
|
SNP ID:
sf0604013603(Gbrowse)
Chromosome: chr06 Position: 4013603 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1233 | 50.04% | 49.96% |
| All Indica | 781 | 27.78% | 72.22% |
| All Japonica | 335 | 91.34% | 8.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 28.92% | 71.08% |
| Indica II | 203 | 28.08% | 71.92% |
| Indica Intermediate | 208 | 25.48% | 74.52% |
| Temperate Japonica | 220 | 94.09% | 5.91% |
| Tropical Japonica | 66 | 81.82% | 18.18% |
| Japonica Intermediate | 49 | 91.84% | 8.16% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 37 | 59.46% | 40.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604013603 | G->A | INTERGENIC | None |