Detailed information of SNP:
|
SNP ID:
sf0604024539(Gbrowse)
Chromosome: chr06 Position: 4024539 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 91.89% | 8.11% |
| All Indica | 798 | 87.72% | 12.28% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 56 | 78.57% | 21.43% |
| Indica I | 374 | 82.35% | 17.65% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604024539 | G->A | LOC_Os06g08310(LOC_Os06g08310.2) | UTR_3_PRIME |