Detailed information of SNP:
|
SNP ID:
sf0604047798(Gbrowse)
Chromosome: chr06 Position: 4047798 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 89.92% | 10.08% |
| All Indica | 799 | 85.11% | 14.89% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 81.60% | 18.40% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604047798 | G->A | INTERGENIC | None |