Detailed information of SNP:
|
SNP ID:
sf0604058962(Gbrowse)
Chromosome: chr06 Position: 4058962 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 57.78% | 42.22% |
| All Indica | 796 | 90.58% | 9.42% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 212 | 71.23% | 28.77% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604058962 | G->A | INTERGENIC | None |