Detailed information of SNP:
|
SNP ID:
sf0604083671(Gbrowse)
Chromosome: chr06 Position: 4083671 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 92.18% | 7.82% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 446 | 76.68% | 23.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 294 | 72.11% | 27.89% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 59 | 77.97% | 22.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604083671 | A->T | INTERGENIC | None |