Detailed information of SNP:
|
SNP ID:
sf0604094634(Gbrowse)
Chromosome: chr06 Position: 4094634 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 57.97% | 42.03% |
| All Indica | 799 | 91.11% | 8.89% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604094634 | A->T | LOC_Os06g08400(LOC_Os06g08400.1) | INTRON |
| sf0604094634 | A->T | LOC_Os06g08400(LOC_Os06g08400.2) | INTRON |