Detailed information of SNP:
|
SNP ID:
sf0604118300(Gbrowse)
Chromosome: chr06 Position: 4118300 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 95.00% | 5.00% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 458 | 85.37% | 14.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 309 | 82.52% | 17.48% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 57 | 89.47% | 10.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604118300 | A->T | INTERGENIC | None |