Detailed information of SNP:
|
SNP ID:
sf0604129042(Gbrowse)
Chromosome: chr06 Position: 4129042 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 81.04% | 18.96% |
| All Indica | 799 | 84.98% | 15.02% |
| All Japonica | 497 | 88.33% | 11.67% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 82.67% | 17.33% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604129042 | C->T | INTERGENIC | None |