Detailed information of SNP:
|
SNP ID:
sf0604140031(Gbrowse)
Chromosome: chr06 Position: 4140031 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 82.03% | 17.97% |
| All Indica | 799 | 85.11% | 14.89% |
| All Japonica | 497 | 88.73% | 11.27% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 82.13% | 17.87% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604140031 | A->G | LOC_Os06g08440(LOC_Os06g08440.1) | Synonymous |