Detailed information of SNP:



SNP ID: sf0604159685(Gbrowse)

Chromosome: chr06

Position: 4159685
Major allele: A

Minor allele: G

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1418 57.97% 42.03%
All Indica799 85.36% 14.64%
All Japonica497 21.53% 78.47%
Aus67 0.00% 100.00%
Indica I375 81.87% 18.13%
Indica II213 93.90% 6.10%
Indica Intermediate211 82.94% 17.06%
Temperate Japonica335 1.79% 98.21%
Tropical Japonica94 84.04% 15.96%
Japonica Intermediate68 32.35% 67.65%
Group VI/Aromatic14 64.29% 35.71%
Intermediate41 58.54% 41.46%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0604159685 G->A INTERGENIC None