Detailed information of SNP:
|
SNP ID:
sf0604159685(Gbrowse)
Chromosome: chr06 Position: 4159685 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 57.97% | 42.03% |
| All Indica | 799 | 85.36% | 14.64% |
| All Japonica | 497 | 21.53% | 78.47% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 81.87% | 18.13% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604159685 | G->A | INTERGENIC | None |