Detailed information of SNP:
|
SNP ID:
sf0604214477(Gbrowse)
Chromosome: chr06 Position: 4214477 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 86.31% | 13.69% |
| All Indica | 799 | 92.62% | 7.38% |
| All Japonica | 496 | 77.22% | 22.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 67 | 67.16% | 32.84% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604214477 | G->A | LOC_Os06g08530(LOC_Os06g08530.4) | Synonymous |
| sf0604214477 | G->A | LOC_Os06g08530(LOC_Os06g08530.1) | Synonymous |
| sf0604214477 | G->A | LOC_Os06g08530(LOC_Os06g08530.5) | Synonymous |
| sf0604214477 | G->A | LOC_Os06g08530(LOC_Os06g08530.3) | Synonymous |
| sf0604214477 | G->A | LOC_Os06g08530(LOC_Os06g08530.2) | Synonymous |