Detailed information of SNP:
|
SNP ID:
sf0604232779(Gbrowse)
Chromosome: chr06 Position: 4232779 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 57.10% | 42.90% |
| All Indica | 796 | 82.16% | 17.84% |
| All Japonica | 497 | 24.35% | 75.65% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 81.02% | 18.98% |
| Indica II | 212 | 85.85% | 14.15% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604232779 | G->A | INTERGENIC | None |