Detailed information of SNP:
|
SNP ID:
sf0604249503(Gbrowse)
Chromosome: chr06 Position: 4249503 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 59.24% | 40.76% |
| All Indica | 798 | 81.58% | 18.42% |
| All Japonica | 497 | 25.75% | 74.25% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 374 | 81.55% | 18.45% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604249503 | A->C | INTERGENIC | None |