Detailed information of SNP:



SNP ID: sf0604280709(Gbrowse)

Chromosome: chr06

Position: 4280709
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 87.80% 12.20%
All Indica799 99.75% 0.25%
All Japonica496 65.73% 34.27%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 99.53% 0.47%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica335 55.82% 44.18%
Tropical Japonica93 92.47% 7.53%
Japonica Intermediate68 77.94% 22.06%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0604280709 T->C INTERGENIC None