Detailed information of SNP:
|
SNP ID:
sf0604286755(Gbrowse)
Chromosome: chr06 Position: 4286755 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 90.99% | 9.01% |
| All Indica | 794 | 93.70% | 6.30% |
| All Japonica | 493 | 87.42% | 12.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 208 | 78.37% | 21.63% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 93 | 49.46% | 50.54% |
| Japonica Intermediate | 66 | 83.33% | 16.67% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604286755 | C->T | LOC_Os06g08610(LOC_Os06g08610.1) | Non-Synonymous SNP |