Detailed information of SNP:
|
SNP ID:
sf0604286834(Gbrowse)
Chromosome: chr06 Position: 4286834 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 58.25% | 41.75% |
| All Indica | 798 | 80.70% | 19.30% |
| All Japonica | 497 | 24.75% | 75.25% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 80.27% | 19.73% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 210 | 79.05% | 20.95% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604286834 | A->G | LOC_Os06g08610(LOC_Os06g08610.1) | UTR_3_PRIME |