Detailed information of SNP:
|
SNP ID:
sf0604293397(Gbrowse)
Chromosome: chr06 Position: 4293397 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1276 | 76.65% | 23.35% |
| All Indica | 777 | 95.75% | 4.25% |
| All Japonica | 382 | 32.20% | 67.80% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 95.16% | 4.84% |
| Indica II | 206 | 97.09% | 2.91% |
| Indica Intermediate | 199 | 95.48% | 4.52% |
| Temperate Japonica | 239 | 7.11% | 92.89% |
| Tropical Japonica | 91 | 87.91% | 12.09% |
| Japonica Intermediate | 52 | 50.00% | 50.00% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604293397 | C->T | LOC_Os06g08630(LOC_Os06g08630.1) | Non-Synonymous SNP |