Detailed information of SNP:
|
SNP ID:
sf0604299122(Gbrowse)
Chromosome: chr06 Position: 4299122 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 55.74% | 44.26% |
| All Indica | 794 | 35.64% | 64.36% |
| All Japonica | 496 | 80.24% | 19.76% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 35.29% | 64.71% |
| Indica II | 211 | 34.60% | 65.40% |
| Indica Intermediate | 209 | 37.32% | 62.68% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 93 | 35.48% | 64.52% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604299122 | A->T | INTERGENIC | None |