Detailed information of SNP:
|
SNP ID:
sf0604302059(Gbrowse)
Chromosome: chr06 Position: 4302059 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 59.03% | 40.97% |
| All Indica | 799 | 81.35% | 18.65% |
| All Japonica | 496 | 25.40% | 74.60% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 81.87% | 18.13% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 93 | 89.25% | 10.75% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604302059 | G->A | LOC_Os06g08640(LOC_Os06g08640.1) | Synonymous |