Detailed information of SNP:
|
SNP ID:
sf0604302919(Gbrowse)
Chromosome: chr06 Position: 4302919 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 72.76% | 27.24% |
| All Indica | 798 | 81.45% | 18.55% |
| All Japonica | 496 | 64.72% | 35.28% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 374 | 81.02% | 18.98% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 55.52% | 44.48% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 67.16% | 32.84% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604302919 | A->G | INTERGENIC | None |