Detailed information of SNP:
|
SNP ID:
sf0604303748(Gbrowse)
Chromosome: chr06 Position: 4303748 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 58.56% | 41.44% |
| All Indica | 799 | 81.10% | 18.90% |
| All Japonica | 497 | 25.15% | 74.85% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 80.80% | 19.20% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604303748 | G->A | INTERGENIC | None |