Detailed information of SNP:
|
SNP ID:
sf0604304986(Gbrowse)
Chromosome: chr06 Position: 4304986 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 53.59% | 46.41% |
| All Indica | 788 | 37.56% | 62.44% |
| All Japonica | 497 | 77.26% | 22.74% |
| Aus | 65 | 78.46% | 21.54% |
| Indica I | 370 | 40.00% | 60.00% |
| Indica II | 211 | 31.75% | 68.25% |
| Indica Intermediate | 207 | 39.13% | 60.87% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604304986 | G->A | INTERGENIC | None |