Detailed information of SNP:
|
SNP ID:
sf0604304998(Gbrowse)
Chromosome: chr06 Position: 4304998 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 51.84% | 48.16% |
| All Indica | 790 | 71.01% | 28.99% |
| All Japonica | 497 | 23.34% | 76.66% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 369 | 73.17% | 26.83% |
| Indica II | 211 | 68.72% | 31.28% |
| Indica Intermediate | 210 | 69.52% | 30.48% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604304998 | A->T | INTERGENIC | None |