Detailed information of SNP:
|
SNP ID:
sf0604307261(Gbrowse)
Chromosome: chr06 Position: 4307261 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 82.04% | 17.96% |
| All Indica | 793 | 94.20% | 5.80% |
| All Japonica | 494 | 60.12% | 39.88% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 371 | 93.80% | 6.20% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 209 | 94.26% | 5.74% |
| Temperate Japonica | 333 | 47.75% | 52.25% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604307261 | T->C | INTERGENIC | None |