Detailed information of SNP:
|
SNP ID:
sf0604310699(Gbrowse)
Chromosome: chr06 Position: 4310699 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 56.06% | 43.94% |
| All Indica | 798 | 77.44% | 22.56% |
| All Japonica | 497 | 24.75% | 75.25% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 76.27% | 23.73% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 210 | 73.81% | 26.19% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604310699 | T->A | INTERGENIC | None |