Detailed information of SNP:
|
SNP ID:
sf0604315446(Gbrowse)
Chromosome: chr06 Position: 4315446 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 70.19% | 29.81% |
| All Indica | 799 | 94.87% | 5.13% |
| All Japonica | 497 | 25.35% | 74.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604315446 | C->T | LOC_Os06g08650(LOC_Os06g08650.1) | UTR_3_PRIME |
| sf0604315446 | C->T | LOC_Os06g08660(LOC_Os06g08660.1) | UTR_3_PRIME |