Detailed information of SNP:
|
SNP ID:
sf0604319248(Gbrowse)
Chromosome: chr06 Position: 4319248 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 85.34% | 14.66% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 490 | 67.96% | 32.04% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 329 | 59.88% | 40.12% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 68.66% | 31.34% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604319248 | T->C | INTERGENIC | None |