Detailed information of SNP:
|
SNP ID:
sf0604328276(Gbrowse)
Chromosome: chr06 Position: 4328276 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1369 | 72.90% | 27.10% |
| All Indica | 797 | 95.11% | 4.89% |
| All Japonica | 449 | 28.29% | 71.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 87.68% | 12.32% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 295 | 4.75% | 95.25% |
| Tropical Japonica | 91 | 91.21% | 8.79% |
| Japonica Intermediate | 63 | 47.62% | 52.38% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604328276 | T->C | INTERGENIC | None |