Detailed information of SNP:
|
SNP ID:
sf0604335471(Gbrowse)
Chromosome: chr06 Position: 4335471 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 84.25% | 15.75% |
| All Indica | 797 | 98.49% | 1.51% |
| All Japonica | 496 | 58.27% | 41.73% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 45.51% | 54.49% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604335471 | C->T | LOC_Os06g08700(LOC_Os06g08700.1) | Non-Synonymous SNP |