Detailed information of SNP:
|
SNP ID:
sf0604335778(Gbrowse)
Chromosome: chr06 Position: 4335778 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 85.33% | 14.67% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 496 | 58.87% | 41.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 45.67% | 54.33% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604335778 | T->C | LOC_Os06g08700(LOC_Os06g08700.1) | Non-Synonymous SNP |