Detailed information of SNP:
|
SNP ID:
sf0604349088(Gbrowse)
Chromosome: chr06 Position: 4349088 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 85.90% | 14.10% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 496 | 60.28% | 39.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 47.60% | 52.40% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604349088 | G->A | LOC_Os06g08720(LOC_Os06g08720.2) | Non-Synonymous SNP |
| sf0604349088 | G->A | LOC_Os06g08720(LOC_Os06g08720.3) | Non-Synonymous SNP |
| sf0604349088 | G->A | LOC_Os06g08720(LOC_Os06g08720.1) | Non-Synonymous SNP |