Detailed information of SNP:
|
SNP ID:
sf0604355747(Gbrowse)
Chromosome: chr06 Position: 4355747 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1366 | 89.68% | 10.32% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 444 | 72.97% | 27.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 288 | 65.97% | 34.03% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 62 | 72.58% | 27.42% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604355747 | T->A | INTERGENIC | None |